Hi Nathan,
So, when you say removed most of the top soil, I am not sure what that means - 6", 12", 18" or just the humus layer? That said, the amount of damage done by removing that much soil can't simply be rebuilt with horse manure and some amendments. Not in less than a year's time, certainly not just a month or so. A soil is so much more that its physical constituents, as you are aware. You also need also some green manures (cover crops), horse manure, amendments, inoculants, and time. Horse manure isn't that hot to begin with but you do want it to decompose and blend it with other components. I would suggest taking the horse manure, making a nice layered compost [multiple materials] out of it, waiting at least a season and then spreading at a rate of at least 3-4 tons per acre, incorporate it, let it settle and then plant. You can't rush good soils. And what you described I feel is actually pretty dangerous - not that it would kill the trees, but it is certainly not a "finished" soil and they wouldn't thrive vs if you waited and built it back completely.
Mike Biltonen, Know Your RootsZone 5b in New York